\\dontrun{} instead of \\donttest{} to prevent blackswan CRAN check
notes when running tests wrapped in \\donttest{}keep_stem_before_txt() function to process Coh-Metrix and GAMET filenames that appear as pathskeep_stem_before_txt() into import_coh() import_gamet() and import_merge_gamet_rb() functionspkgdown() site to host documentation on GitHubpredict_quality() example to run deterministically when options(writeAlizer.offline = TRUE).'example' model with wa_seed_example_models("example", dir = tempdir()) and restores prior options after cleanup.R CMD check --as-cran --run-donttest.rlang::abort():
writeAlizer_registry_missing – missing/invalid artifacts.csv.writeAlizer_unknown_model – unknown/unsupported model key (raised by preprocess() / predict_quality()).writeAlizer_download_failed – offline/bad URL/checksum fetch failures.writeAlizer_internal_mismatch – expected submodel count ≠ preprocessing splits..wa_ensure_file - added classed errors and download retries.wa_ensure_file():
options(writeAlizer.mock_dir=) (preserves subdirs).file:// URLs; clearer offline guidance..wa_parts_for() validates inputs and uses canonicalized model keys..wa_load_model_rdas() / .wa_load_fits_list():
mock_dir artifacts; load via temp env; pick sensible object (fit, model, etc.).example..wa_require_pkgs_for_fits() collects deps from model classes and train$modelInfo$library; errors with install hint..wa_validate_import() - checks ID column for duplicates and character typerequired vs missing from Suggests + override options(writeAlizer.required_pkgs=).required; strips qualifiers for missing.install.packages() command.NA/invalid model with actionable messages.predict_quality() surfaces unknown model keys (includes canonicalized key).ID; supports v2 varlists and consolidated-split behavior.wa_sample_path() to reliably find inst/extdata in dev/install contexts.options(writeAlizer.offline=TRUE) and avoid HEAD probes..quiet_eval() to silence messages/warnings in targeted assertions.rb_mod1, rb_mod2, rb_mod3narr_v2, rb_mod3exp_v2, rb_mod3per_v2, rb_mod3all_v2coh_mod1, coh_mod2, coh_mod3narr, coh_mod3exp, coh_mod3per, coh_mod3allgamet_cws1mock_dir; verifies prediction columns and mean-column rules.rb_mod3all smoke test made offline-only with mocked varlists.import_rb() path with SEP=, + read.table(text=readLines()).NaN→NA in character columns; guarded numeric-like conversion (accepts integer where appropriate).wa_sample_path()).download.file errors.Replaced writeAlizer:::wa_seed_example_models() with writeAlizer::wa_seed_example_models() in examples and documentation, per CRAN’s guidance to avoid accessing unexported objects.
Exported wa_seed_example_models() with full documentation:
@return (returns the created temp path invisibly).tempdir() and cleans up; it also restores any prior option value.options(writeAlizer.mock_dir = <path>).@return added to import_coh(), import_rb(), import_gamet(), import_merge_gamet_rb().\\dontrun{} replaced with \\donttest{} where needed; fast examples unwrapped; predict_quality() uses a tiny offline 'example' model seeded in tempdir() with cleanup.tempdir(); caching standardized via tools::R_user_dir("writeAlizer","cache").wa_cache_dir() and wa_cache_clear(ask=) for cache discovery/cleanup.model_deps() reports (does not install) optional packages and prints an install hint; install_model_deps() deprecated.withr fixtures; no temp detritus; removed deprecated global teardown.writeAlizer.mock_dir.install_model_deps():
model argument.options(writeAlizer.require_pkgs_for_fits = function() ...) hook; dropped internal helper.Suggests discovery path via utils::packageDescription(..., fields = "Suggests").dry_run = TRUE now returns tokens visibly (character vector); version qualifiers are stripped only for checks/installs.artifact_registry: prefer CSV (inst/metadata/artifacts.csv) and remove legacy in-code fallback table; tighter input validation.install_model_deps():
options(writeAlizer.require_pkgs_for_fits = function(model, install, return_pkgs) {...}).install_model_deps(); tidied roxygen..wa_ensure_file) with explicit cache dirs and checksum paths.download.file() and file URLs during tests.rb_mod3all now calls the rb_mod3all_v2 models).predict_quality() now returns per-submodel scores and the overall mean column pred_<model>_mean (where applicable).import_rb() now keeps ReaderBench features by name using the packaged sample_rb.csv header (first 404), dropping 405+. It falls back to the legacy positional selection if the header is unavailable, reducing brittleness to column reordering.install_model_deps() helper to install Suggests for a given model.rb_mod3narr_v2, rb_mod3exp_v2, rb_mod3per_v2, rb_mod3all_v2)
and Coh-Metrix (coh_mod3narr, coh_mod3exp, coh_mod3per, coh_mod3all).rb_mod3narr, rb_mod3exp, rb_mod3per, rb_mod3all).predict_quality() call..csv.predict_quality() now also returns an ID variable.